Healthy Pumpkin Muffins

Section: Flavor Without Gluten

These moist pumpkin muffins combine whole-wheat flour, pumpkin puree, and honey for a wholesome treat. Infused with warm pumpkin pie spice and a touch of cornstarch for lightness, they offer a balanced blend of flavors. Melted butter adds richness, while optional semi-sweet chocolate chips provide subtle bursts of sweetness. Simple mixing and quick baking make them a convenient option for breakfast or snacks.

Harper
Contributed by Harper
Last updated on Wed, 26 Nov 2025 00:51:21 GMT
A stack of pumpkin muffins with chocolate chips. Save
A stack of pumpkin muffins with chocolate chips. | flavorrhaven.com

These healthy pumpkin muffins have become my go-to treat whenever I want something sweet but nourishing. They balance the moist, spiced pumpkin flavor with a subtle sweetness from honey and a hint of chocolate, making them a crowd-pleaser for both breakfast and snack time. Plus, they incorporate whole grains and lightly processed ingredients to keep things wholesome.

I first baked these muffins on a chilly autumn afternoon when the pumpkin patch inspired me. Now they’re a favorite in the house that I love sharing with friends and family.

Ingredients

  • Whole-wheat flour: One and one-quarter cups build a hearty texture and add fiber for fullness
  • Cornstarch: One-quarter cup helps lighten the flour mix for tender muffins, choose fine cornstarch for best results
  • Pumpkin pie spice: One tablespoon brings warm, seasonal flavor; opt for a blend that includes cinnamon, nutmeg, and cloves
  • Baking soda: One teaspoon works with pumpkin’s acidity to give rise and fluffiness
  • Baking powder: One-quarter teaspoon provides extra lift and softness
  • Salt: Half a teaspoon balances sweetness and enhances all flavors
  • Large eggs: Two provide structure and moisture
  • Honey: Half a cup acts as natural sweetness replacing refined sugar, pick raw honey for more depth
  • Melted butter or coconut butter: One-third cup adds richness and moisture; coconut butter is a great dairy-free alternative
  • Canned pumpkin puree: One cup is the star ingredient, opt for pure pumpkin, not pie filling
  • Semi-sweet chocolate chips: Half a cup optional but a tasty addition; choose high-quality chips for better melting and flavor

Instructions

Preheat the Oven:
Set the oven to 350 degrees Fahrenheit. Prepare a 12-cup muffin pan with non-stick spray or paper liners to prevent sticking.
Combine Dry Ingredients:
In a large bowl, whisk together whole-wheat flour, cornstarch, pumpkin pie spice, baking soda, baking powder, and salt. Make sure the spices and leavening agents are evenly distributed for consistent flavor and rise.
Mix Wet Ingredients:
In a separate bowl, beat the eggs with melted butter (or coconut butter), honey, and pumpkin puree. Combining these ingredients separately ensures the honey incorporates smoothly and the batter stays moist.
Bring it Together:
Create a well in the center of the dry ingredients. Pour in the pumpkin mixture and add the chocolate chips if using. Stir carefully until just combined. Avoid over-mixing to keep muffins tender and light.
Portion and Bake:
Spoon the batter evenly into the prepared muffin cups, filling each about two-thirds full or a bit more for larger muffins. Bake in the preheated oven for 16 to 18 minutes or until a toothpick inserted in the center comes out clean.
A tray of muffins with chocolate chips and pumpkin.
A tray of muffins with chocolate chips and pumpkin. | flavorrhaven.com

One of my favorite moments with these muffins was baking them for a friend's fall gathering. The smell filled the kitchen, and everyone loved how they tasted like a cozy hug in every bite.

Storage Tips

Store leftover muffins in an airtight container at room temperature for up to three days. For longer storage, freeze them individually on a baking tray before transferring to a sealed bag. Reheat in a toaster oven or microwave for a quick warm treat.

Ingredient Substitutions

You can swap the whole-wheat flour for all-purpose flour if you prefer a lighter texture, although this reduces fiber content. Maple syrup is a good alternative to honey for a different natural sweetness. If avoiding eggs, try using flax eggs but expect a slightly denser muffin.

Serving Suggestions

Enjoy these muffins warm with a pat of butter or a smear of cream cheese. They also pair beautifully with a hot cup of coffee or chai for a comforting breakfast or snack. Serve alongside fresh fruit or a dollop of yogurt for extra protein.

A bowl of chocolate chips next to a muffin.
A bowl of chocolate chips next to a muffin. | flavorrhaven.com

If you want more pronounced pumpkin flavor, add a teaspoon of vanilla extract to the wet ingredients.

FAQs about Recipes

→ What makes these pumpkin muffins healthy?

Using whole-wheat flour and natural sweeteners like honey boosts fiber and reduces refined sugars, making these muffins nourishing and balanced.

→ Can I substitute the butter in this dish?

Yes, melted coconut butter works well as a substitute, adding a subtle flavor and helping keep the muffins moist.

→ How does cornstarch affect the muffin texture?

Cornstarch lightens the muffins' crumb, resulting in a tender and soft texture that complements the dense pumpkin puree.

→ Are chocolate chips necessary in this preparation?

No, chocolate chips are optional and can be omitted or replaced if preferred, without affecting the core flavor.

→ What is the best way to check the muffins are baked through?

Insert a toothpick into the center; if it comes out clean, the muffins are fully baked and ready to enjoy.

Healthy Pumpkin Muffins

Wholesome pumpkin muffins with honey, spices, and whole-wheat flour for a moist, healthy snack.

Prep Time
15 mins
Cooking Time
18 mins
Overall Time
33 mins
Contributed by: Harper

Recipe Category: Gluten-Free

Skill Level: Beginner-Friendly

Cuisine Type: American

Recipe Output: 12 Portion Size (12 standard-size muffins)

Dietary Features: Vegetarian-Friendly

What You'll Need

→ Dry Ingredients

01 1 1/4 cups whole-wheat flour
02 1/4 cup cornstarch
03 1 tablespoon pumpkin pie spice
04 1 teaspoon baking soda
05 1/4 teaspoon baking powder
06 1/2 teaspoon salt

→ Wet Ingredients

07 2 large eggs
08 1/2 cup honey
09 1/3 cup melted butter or melted coconut butter
10 1 cup canned pumpkin puree

→ Add-ins

11 1/2 cup semi-sweet chocolate chips (optional)

Step-by-Step Guide

Step 01

Preheat the oven to 350°F and spray a 12-cup muffin tin with non-stick cooking spray or line with muffin liners.

Step 02

In a large bowl, whisk together whole-wheat flour, cornstarch, pumpkin pie spice, baking soda, baking powder, and salt until evenly mixed.

Step 03

In a separate bowl, beat the eggs, then stir in melted butter, honey, and pumpkin puree until combined.

Step 04

Create a well in the center of the dry ingredients, pour in the wet mixture and add chocolate chips if using. Gently fold just until ingredients are combined; avoid over-mixing.

Step 05

Spoon the batter into the prepared muffin pan, filling each cup about two-thirds full. Bake for 16 to 18 minutes or until a toothpick inserted into the center comes out clean.

Additional Notes

  1. For a dairy-free option, substitute butter with coconut butter or a plant-based alternative.

Tools You'll Need

  • 12-cup muffin tin
  • Mixing bowls
  • Whisk
  • Measuring cups and spoons

Allergen Notices

Inspect every ingredient for potential allergens and seek expert advice if necessary.
  • Contains eggs and dairy; may contain gluten from whole-wheat flour.

Per Serving Nutritional Info

Keep in mind these are general guidelines, not a replacement for professional advice.
  • Calories: 180
  • Fats: 6 grams
  • Carbohydrates: 26 grams
  • Proteins: 4 grams