
These protein bagels have become my go to whenever I crave something filling and wholesome without much fuss. Using Greek yogurt and simple flour means you can whip up soft delicious bagels at home with an impressive hit of protein all before your coffee is finished brewing. You get total control over toppings and the ability to make these fresh in the time it takes to prepare breakfast sandwiches or a batch of toast.
When I first tried these I could not believe how easy it was to achieve bakery style results in my tiny kitchen. My family now requests them on weekends and they never last long enough for leftovers.
Ingredients
- Self raising flour or all purpose flour: gives structure and classic bagel texture. If using plain all purpose flour be sure to add the baking powder to provide lift and keep each bagel light. Whole wheat or white both work
- Baking powder: acts as the rising agent if using plain flour which avoids the need for yeast and makes these low maintenance
- Pinch of sea salt: balances the flavor and enhances both the yogurt and toppings. Always opt for a high quality fine salt here
- Greek yogurt: provides moisture tenderness and a big boost of protein. Choose a thick non fat brand for the best texture
- Egg wash or olive oil spray: are optional but help your choice of toppings stick and give a golden finish
- Everything bagel seasoning: brings crunch and savory flavor but try sesame seeds poppy seeds or dried onion for a personal touch
- Choose fresh Greek yogurt with no runniness: and always check your baking powder is not expired for reliable results
Instructions
- Preheat the Oven:
- Begin by setting your oven to 350 degrees F or 175 degrees C so it reaches temperature while you prepare the dough
- Mix Ingredients:
- In a large bowl stir together the flour and a pinch of sea salt. If using all purpose flour add the baking powder now. Spoon in the Greek yogurt and stir until combined into a shaggy dough. Use your hands to bring it together into one ball making sure no pockets of flour remain
- Knead the Dough:
- Turn the dough out onto a surface dusted with flour. Knead for several minutes using the heel of your hand to press and fold. Continue until the dough is smooth supple and not sticking. If it clings too much slowly add more flour a bit at a time
- Shape the Bagels:
- Divide the dough evenly into four pieces. Roll each piece into a ball. Push your finger through the center and gently stretch the hole wide forming a classic bagel shape. Make the holes larger than you think as they will shrink in baking. You can also roll dough into ropes and join the ends for the same result
- Prepare for Baking:
- Place shaped bagels onto a parchment lined baking tray spaced apart. Gently brush tops with egg wash or a spritz of olive oil spray to help any toppings stick. Sprinkle your chosen seasoning generously and press lightly so nothing falls as they bake
- Bake:
- Move the tray to the middle rack of your preheated oven. Bake for about 25 to 30 minutes checking that the bagels turn golden brown and feel set. If in doubt leave them in for the full 30 minutes as extra color creates a better crust
- Cool and Serve:
- Once golden remove the tray and transfer the bagels to a wire rack. Let them cool fully for 10 to 15 minutes before slicing. Enjoy as is or toast the cut sides for extra crunch and warmth then layer on your favorite spreads or sandwich fillings

The Greek yogurt you use really makes a difference. I love using a locally made thick yogurt that gives the bagels the softest inside and a slight tanginess. I remember my nephew helping to poke the holes in each dough ball and laughing when they shrank as we baked them up fresh on a Sunday morning.
Storage Tips
Keep extra bagels in an airtight container for up to three days at room temperature for best texture. After that pop them in the fridge or freezer. To freeze let bagels cool completely then individually wrap in plastic or foil and freeze for up to two months. Thaw at room temp or toast straight from frozen for ultimate convenience.
Ingredient Substitutions
If you do not have self raising flour use regular all purpose plus baking powder as directed. For a dairy free version you can try a thick unsweetened dairy free yogurt though texture may differ. Add a spoonful of whole wheat flour for extra fiber or swap in gluten free flour blends designed for baking.
Serving Suggestions
Halve and toast the bagels then layer with smashed avocado tomato and a runny egg for a savory breakfast. For a sweet twist spread with nut butter and sliced banana. These bagels are sturdy enough to hold up to sandwich fillings for lunch as well.
Cultural and Historical Context
Bagels have a long history in Eastern European Jewish communities prized for their chewy crust and ability to feed a crowd with simple ingredients. While traditional recipes require boiling and yeast this shortcut version evolved with modern kitchens in mind keeping the spirit of homemade bread alive especially for folks with busy schedules.
Seasonal Adaptations
Add a sprinkle of cinnamon and raisins in autumn for cozy flavors. Top with flaky sea salt and fresh herbs in spring for brightness. Swap in pumpkin puree for some yogurt in fall for a subtle twist.
Success Stories
Once I brought these bagels to a weekend potluck brunch and everyone was amazed they were homemade. My neighbor now texts me photos every time she bakes a batch with her own creative toppings. They truly bring out a sense of kitchen fun whether you are cooking solo or with kids joining in.
Freezer Meal Conversion
To make these a freezer meal bake fully and let cool. Slice if desired then freeze on a tray before transferring to bags. Reheat directly from frozen by toasting or warming in the oven for fresh bagel texture any day of the week. You can also prep the dough in advance refrigerating covered for up to a day before shaping and baking.

These homemade protein bagels are the perfect blend of simplicity and satisfaction. Enjoy fresh, with your favorite toppings, any day of the week.
FAQs about Recipes
- → Can I use whole wheat flour for these bagels?
Yes, whole wheat flour works well and adds a hearty texture. Combine with baking powder if not using self-raising flour.
- → How do I make the bagels chewier?
Use bread flour instead of all-purpose for a chewier texture, and knead until the dough is smooth and elastic.
- → Is non-fat Greek yogurt necessary?
Non-fat Greek yogurt keeps these lighter, but you can substitute low-fat or full-fat for richer flavor.
- → What toppings work well?
Everything bagel seasoning, sesame seeds, poppy seeds, or a sprinkle of sea salt add great flavor and crunch.
- → Can these be made ahead and frozen?
Yes, freeze cooled bagels in an airtight bag. Toast directly from the freezer for a quick snack or breakfast.
- → How do I prevent bagels from being too dense?
Don’t overmix the dough, and use fresh baking powder to help the bagels turn out light and fluffy.